Chem. J. Chinese Universities ›› 2021, Vol. 42 ›› Issue (7): 2210.doi: 10.7503/cjcu20210308
• Article • Previous Articles Next Articles
ZHENG Ruoxin, ZHANG Igor Ying(), XU Xin
Received:
2021-05-04
Online:
2021-07-10
Published:
2021-06-22
Contact:
ZHANG Igor Ying
E-mail:igor_zhangying@fudan.edu.cn
Supported by:
CLC Number:
TrendMD:
ZHENG Ruoxin, ZHANG Igor Ying, XU Xin. Development and Benchmark of Lower Scaling Doubly Hybrid Density Functional XYG3[J]. Chem. J. Chinese Universities, 2021, 42(7): 2210.
CPU | Intel, Gold 6142 2.6 GHz |
---|---|
Memory(per node) | 192.0 GB DDR4 |
Network | Omni?Path, 100 Gbps |
Storage system | ParaStor, 300 5800 TB |
Operate system | Linux |
Job management system | LSF 10.1 |
CPU | Intel, Gold 6142 2.6 GHz |
---|---|
Memory(per node) | 192.0 GB DDR4 |
Network | Omni?Path, 100 Gbps |
Storage system | ParaStor, 300 5800 TB |
Operate system | Linux |
Job management system | LSF 10.1 |
Reaction index | Number of atoms(non?hydrogen) | XYG3 isomerization energy/(kJ·mol-1) | ||
---|---|---|---|---|
Canonical XYG3 | LT?XYG3 | Absolute error | ||
2 | 41(17) | -181.10 | -181.48 | 0.39 |
3 | 24(12) | -117.82 | -117.47 | -0.35 |
5 | 32(16) | -163.15 | -163.22 | 0.07 |
6 | 48(28) | -195.01 | -194.04 | -0.96 |
7 | 51(21) | -104.22 | -104.15 | -0.07 |
8 | 43(22) | 438.46 | 436.79 | 1.67 |
9 | 32(12) | 36.22 | 35.55 | 0.67 |
10 | 35(15) | -11.31 | -11.09 | -0.22 |
11 | 30(20) | 35.90 | 36.34 | -0.44 |
12 | 40(24) | 7.82 | 7.17 | 0.65 |
13 | 26(14) | 59.57 | 58.95 | 0.62 |
14 | 26(14) | -0.59 | -0.58 | -0.01 |
15 | 42(18) | 59.43 | 59.00 | 0.43 |
16 | 51(28) | 1.85 | 0.99 | 0.86 |
17 | 44(24) | -184.71 | -184.09 | -0.62 |
18 | 39(23) | 84.84 | 85.44 | -0.60 |
19 | 36(23) | 144.04 | 144.05 | -0.01 |
20 | 28(16) | 20.95 | 20.62 | 0.33 |
21 | 36(20) | -148.63 | -148.29 | -0.33 |
22 | 44(29) | -146.46 | -146.65 | 0.19 |
23 | 39(18) | -43.70 | -43.55 | -0.14 |
24 | 52(19) | -0.82 | -0.57 | -0.25 |
Reaction index | Number of atoms(non?hydrogen) | XYG3 isomerization energy/(kJ·mol-1) | ||
---|---|---|---|---|
Canonical XYG3 | LT?XYG3 | Absolute error | ||
2 | 41(17) | -181.10 | -181.48 | 0.39 |
3 | 24(12) | -117.82 | -117.47 | -0.35 |
5 | 32(16) | -163.15 | -163.22 | 0.07 |
6 | 48(28) | -195.01 | -194.04 | -0.96 |
7 | 51(21) | -104.22 | -104.15 | -0.07 |
8 | 43(22) | 438.46 | 436.79 | 1.67 |
9 | 32(12) | 36.22 | 35.55 | 0.67 |
10 | 35(15) | -11.31 | -11.09 | -0.22 |
11 | 30(20) | 35.90 | 36.34 | -0.44 |
12 | 40(24) | 7.82 | 7.17 | 0.65 |
13 | 26(14) | 59.57 | 58.95 | 0.62 |
14 | 26(14) | -0.59 | -0.58 | -0.01 |
15 | 42(18) | 59.43 | 59.00 | 0.43 |
16 | 51(28) | 1.85 | 0.99 | 0.86 |
17 | 44(24) | -184.71 | -184.09 | -0.62 |
18 | 39(23) | 84.84 | 85.44 | -0.60 |
19 | 36(23) | 144.04 | 144.05 | -0.01 |
20 | 28(16) | 20.95 | 20.62 | 0.33 |
21 | 36(20) | -148.63 | -148.29 | -0.33 |
22 | 44(29) | -146.46 | -146.65 | 0.19 |
23 | 39(18) | -43.70 | -43.55 | -0.14 |
24 | 52(19) | -0.82 | -0.57 | -0.25 |
1 | Koch W., Holthausen M. C., A Chemist’s Guide to Density Functional Theory: Second Edition, Wiley⁃VCH, Weinheim, 2001 |
2 | Perdew J. P., Schmidt K., AIP Conf. Proc., 2001, 577, 1—20 |
3 | Slater J. C., Phillips J. C., Phys. Today, 1974, 27(12), 49—50 |
4 | Vosko S. H., Wilk L., Nusair M., Can. J. Phys. 1980, 58(8), 1200—1211 |
5 | Perdew J. P., Zunger A., Phys. Rev. B, 1981, 23(10), 5048—5079 |
6 | Perdew J. P., Phys. Rev. B, 1986, 33(12), 8822—8824 |
7 | Becke A. D., Phys. Rev. A, 1988, 38(6), 3098—3100 |
8 | Lee C. T., Yang W. T., Parr R. G., Phys. Rev. B, 1988, 37(2), 785—789 |
9 | Anastassakis E., Phys. Rev. B, 1992, 46(20), 13244—13253 |
10 | Becke A. D., J. Chem. Phys., 1993, 98(2), 1372—1377 |
11 | Stephens P. J., Devlin F. J., Chabalowski C. F., Frisch M. J., J. Phys. Chem., 1994, 98(45), 11623—11627 |
12 | Devlin F. J., Finley J. W., Stephens P. J., Frisch M. J., J. Phys. Chem., 1995, 99(46), 16883—16902 |
13 | Perdew J. P., Burke K., Ernzerhof M., Phys. Rev. Lett., 1996, 77(18), 3865—3868 |
14 | Adamo C., Barone V., J. Chem. Phys., 1999, 110(13), 6158—6170 |
15 | Ernzerhof M., Scuseria G. E., J. Chem. Phys., 1999, 110(11), 5029—5036 |
16 | Hammer B., Hansen L. B., Norskov J. K., Phys. Rev. B, 1999, 59(11), 7413—7421 |
17 | Raghavachari K., Theor. Chem. Acc., 2000, 103(3/4), 361—363 |
18 | Boese A. D., Handy N. C., J. Chem. Phys., 2002, 116(22), 9559—9569 |
19 | Heyd J., Scuseria G. E., Ernzerhof M., J. Chem. Phys., 2003, 118(18), 8207—8215 |
20 | Tao J. M., Perdew J. P., Staroverov V. N., Scuseria G. E., Phys. Rev. Lett., 2003, 91(14), 146401 |
21 | Xu X., Goddard III W. A., Proc. Natl. Acad. Sci. USA, 2004, 101(9), 2673—2677 |
22 | Xu X., Zhang Q. S., Muller R. P., Goddard III W. A., J. Chem. Phys., 2005, 122(1), 014105 |
23 | Zhao Y., Truhlar D. G., J. Chem. Phys., 2006, 125(19), 194101 |
24 | Zhao Y., Truhlar D. G., Theor. Chem. Acc., 2008, 120(1—3), 215—241 |
25 | Sun J. W., Ruzsinszky A., Perdew J. P., Phys. Rev. Lett., 2015, 115(3), 036402 |
26 | Zhao Y., Lynch B. J., Truhlar D. G., J. Phys. Chem. A, 2004, 108(21), 4786—4791 |
27 | Grimme S., J. Chem. Phys., 2006, 124(3), 034108 |
28 | Zhang Y., Xu X., Goddard III W. A., Proc. Natl. Acad. Sci. USA, 2009, 106(13), 4963—4968 |
29 | Zhang I. Y., Su N. Q., Bremond E. A. G., Adamo C., Xu X., J. Chem. Phys., 2012, 136(17), 174103 |
30 | Zhang I. Y., Xu X., J. Phys. Chem. Lett., 2013, 4(10), 1669—1675 |
31 | Zhang I. Y., Luo Y., Xu X., J. Chem. Phys., 2010, 133(10), 104105 |
32 | Zhang I. Y., Luo Y., Xu X., J. Chem. Phys., 2010, 132(19), 194105 |
33 | Zhang I. Y., Xu X., Phys. Chem. Chem. Phys., 2012, 14(36), 12554—12570 |
34 | Su N. Q., Yang W. T., Mori⁃Sánchez P., Xu X., J. Phys. Chem. A, 2014, 118(39), 9201—9211 |
35 | Su N. Q., Xu X., J. Phys. Chem. A, 2015, 119(9), 1590—1599 |
36 | Su N. Q., Xu X., Chem. Commun., 2016, 52(96), 13840—13860 |
37 | Su N. Q., Xu X., Wires Comput. Mol. Sci., 2016, 6(6), 721—747 |
38 | Zhang I. Y., Xu X., Jung Y., Goddard III W. A., Proc. Natl. Acad. Sci. USA, 2011, 108(50), 19896—19900 |
39 | Ihrig A. C., Wieferink J., Zhang I. Y., Ropo M., Ren X. G., Rinke P., Scheffler M., Blum V., New J. Phys., 2015, 17(9), 093020 |
40 | Ihrig A. C., Laplace⁃Transformed MP2 with Local RI Strategies, Fritz Haber Institute of the Max Planck Society, Berlin, 2017 |
41 | Häser M., Almlof J., J. Chem. Phys., 1992, 96(1), 489—494 |
42 | Takatsuka A., Ten⁃no S., Hackbusch W., J. Chem. Phys., 2008, 129(4), 044112 |
43 | Lambrecht D. S., Doser B., Ochsenfeld C., J. Chem. Phys., 2005, 123(18), 184102 |
44 | Zhang I. Y., Logsdail A. J., Ren X., Levchenko S. V., Ghiringhelli L., Scheffler M., New J. Phys., 2019, 21(1), 013025 |
45 | Dagum L., Menon R., IEEE Comput. Sci. Eng., 1998, 5(1), 46—55 |
46 | Gropp W., Lusk E., Doss N., Skjellum A., Parallel Comput., 1996, 22(6), 789—828 |
47 | Zhang I. Y., Ren X. G., Rinke P., Blum V., Scheffler M., New J. Phys., 2013, 15(12), 123033 |
48 | Schumacher S. I. L. K., Hohenstein E. G., Parrish R. M., Wang L. P., Martinez T. J., J. Chem. Theory Comput., 2015, 11(7), 3042—3052 |
49 | Neese F., Wennmohs F., Hansen A., J. Chem. Phys., 2009, 130(11), 114108 |
50 | Goerigk L., Grimme S., J. Chem. Theory Comput., 2011, 7(2), 291—309 |
[1] | HE Hongrui, XIA Wensheng, ZHANG Qinghong, WAN Huilin. Density-functional Theoretical Study on the Interaction of Indium Oxyhydroxide Clusters with Carbon Dioxide and Methane [J]. Chem. J. Chinese Universities, 2022, 43(8): 20220196. |
[2] | WONG Honho, LU Qiuyang, SUN Mingzi, HUANG Bolong. Rational Design of Graphdiyne-based Atomic Electrocatalysts: DFT and Self-validated Machine Learning [J]. Chem. J. Chinese Universities, 2022, 43(5): 20220042. |
[3] | LIU Yang, LI Wangchang, ZHANG Zhuxia, WANG Fang, YANG Wenjing, GUO Zhen, CUI Peng. Theoretical Exploration of Noncovalent Interactions Between Sc3C2@C80 and [12]Cycloparaphenylene Nanoring [J]. Chem. J. Chinese Universities, 2022, 43(11): 20220457. |
[4] | WANG Yuanyue, AN Suosuo, ZHENG Xuming, ZHAO Yanying. Spectroscopic and Theoretical Studies on 5-Mercapto-1,3,4-thiadiazole-2-thione Microsolvation Clusters [J]. Chem. J. Chinese Universities, 2022, 43(10): 20220354. |
[5] | ZHOU Chengsi, ZHAO Yuanjin, HAN Meichen, YANG Xia, LIU Chenguang, HE Aihua. Regulation of Silanes as External Electron Donors on Propylene/butene Sequential Polymerization [J]. Chem. J. Chinese Universities, 2022, 43(10): 20220290. |
[6] | CHENG Yuanyuan, XI Biying. Theoretical Study on the Fragmentation Mechanism of CH3SSCH3 Radical Cation Initiated by OH Radical [J]. Chem. J. Chinese Universities, 2022, 43(10): 20220271. |
[7] | MA Lijuan, GAO Shengqi, RONG Yifei, JIA Jianfeng, WU Haishun. Theoretical Investigation of Hydrogen Storage Properties of Sc, Ti, V-decorated and B/N-doped Monovacancy Graphene [J]. Chem. J. Chinese Universities, 2021, 42(9): 2842. |
[8] | ZHONG Shengguang, XIA Wensheng, ZHANG Qinghong, WAN Huilin. Theoretical Study on Direct Conversion of CH4 and CO2 into Acetic Acid over MCu2Ox(M = Cu2+, Ce4+, Zr4+) Clusters [J]. Chem. J. Chinese Universities, 2021, 42(9): 2878. |
[9] | HUANG Luoyi, WENG Yueyue, HUANG Xuhui, WANG Chaojie. Theoretical Study on the Structures and Properties of Flavonoids in Plantain [J]. Chem. J. Chinese Universities, 2021, 42(9): 2752. |
[10] | WANG Jian, ZHANG Hongxing. Theoretical Study on the Structural-photophysical Relationships of Tetra-Pt Phosphorescent Emitters [J]. Chem. J. Chinese Universities, 2021, 42(7): 2245. |
[11] | HU Wei, LIU Xiaofeng, LI Zhenyu, YANG Jinlong. Surface and Size Effects of Nitrogen-vacancy Centers in Diamond Nanowires [J]. Chem. J. Chinese Universities, 2021, 42(7): 2178. |
[12] | YANG Yiying, ZHU Rongxiu, ZHANG Dongju, LIU Chengbu. Theoretical Study on Gold-catalyzed Cyclization of Alkynyl Benzodioxin to 8-Hydroxy-isocoumarin [J]. Chem. J. Chinese Universities, 2021, 42(7): 2299. |
[13] | YING Fuming, JI Chenru, SU Peifeng, WU Wei. λ-DFCAS: A Hybrid Density Functional Complete Active Space Self Consistent Field Method [J]. Chem. J. Chinese Universities, 2021, 42(7): 2218. |
[14] | LIU Yang, LI Qingbo, SUN Jie, ZHAO Xian. Direct Synthesis of Graphene on AlN Substrates via Ga Remote Catalyzation [J]. Chem. J. Chinese Universities, 2021, 42(7): 2271. |
[15] | LIU Changhui, LIANG Guojun, LI Yanlu, CHENG Xiufeng, ZHAO Xian. Density Functional Theory Study of NH3 Adsorption on Boron Nanotubes [J]. Chem. J. Chinese Universities, 2021, 42(7): 2263. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||