Chem. J. Chinese Universities ›› 1993, Vol. 14 ›› Issue (12): 1719.

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Determination of Three-Dimensional Structures of Amethystonal in Solution by< 2D-NMR and Molecular Mechanics Calculation

YANG Yan-Wu1, JI Ang1, HE Bing-Lin1, XU Xiao-Long2, WANG De-Hua2, QIAN Bao-Gong2, ZHAO Qing-Zhi3   

  1. 1. Institute of Polymer Chemistry, Nankai University, Tianjin, 300071;
    2. Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics, The Chinese Academy of Sciences, Wuhan;
    3. Department of Organic Chemistry, Henan University of Medical Science, Zhengzhou
  • Received:1993-02-23 Revised:1993-05-13 Online:1993-12-24 Published:1993-12-24

Abstract: Amethystonal was an effectively antineoplastic, antiphlogistic and antibacterial component first isolated from the leaves of Rbdosia amethystoides(Beath) C.Y.WUet Hsuen., a Chinese herbal medicine collected in Henan province of China.The 13Cand 1H NMRspectra were comepletely assigned by decoupled 13Cspectrum, DEPT, hetero- and homo-nuclear correlation spectra.The proton coupling constants were measured by resolution-enhanced ID-1Hspectrum and 2D-J-resolved spectrum.The interproton distances between proton i and j were calculated according to 1/rij6∝, where Aij was the integration value of the cross peak in phase sensitive NOESYspectrum.The initial spatial structure of amethystonal in solution was computed by WUPHmethod with the structural parameters measured by NMRexperiments as input data, and the minimized three dimensional structure was obtained through the molecular mechanics calculation on the basis of WUPHcalculation.The interproton distances of each proton pairs obtained from the cross peaks in phase sensitive NOESYspectrum were calculated from the atomic coordinates, and the coupling constants of protons were predicted from the dihedral angles given by MM2 method with Karplus equation.The maximum deviation between interproton distances calculated with energy minimizing calculation and that obtained from NOESYexperimental data of amethystonal was 0.045 nm, and the root-mean-square deviation was 0.023 nm.The analysis of interproton distances together with the analysis of coupling constants indicated that the com-binization of WUPHmethod based upon the NMRexperimental data with the molecular mechanics (MM2) calculation could provide the three-dimensional structure of amethystonal in solution.

Key words: 2D-NMR, NOESY, Three-dimensional structrue in solution, Amethystonal

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